M. Hucka : rechercher sur Z-Library

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1

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., and the rest of the SBML Forum:,, Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S.,

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 104 KB

english, 2003

2

A rapid method of determining the strength of rocks in situ

Journal:

International Journal of Rock Mechanics and Mining Sciences & Geomechanics Abstracts

Année:

1965

Langue:

english

Fichier:

PDF, 385 KB

english, 1965

3

The Systems Biology Graphical Notation

Novère, Nicolas Le, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Année:

2009

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2009

4

SBMLToolbox: an SBML toolbox for MATLAB users

Keating, S. M., Bornstein, B. J., Finney, A., Hucka, M.

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 67 KB

english, 2006

5

Brittleness determination of rocks by different methods

V. Hucka, B. Das

Journal:

International Journal of Rock Mechanics and Mining Sciences & Geomechanics Abstracts

Année:

1974

Langue:

english

Fichier:

PDF, 314 KB

english, 1974

6

Robo-Soar: An integration of external interaction, planning, and learning using Soar

John E. Laird, Eric S. Yager, Michael Hucka, Christopher M. Tuck

Journal:

Robotics and Autonomous Systems

Année:

1991

Langue:

english

Fichier:

PDF, 1.38 MB

english, 1991

7

Erratum: The Systems Biology Graphical Notation

Le Novère, Nicolas, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Année:

2009

Langue:

english

Fichier:

PDF, 65 KB

english, 2009

8

Rules for Modeling Signal-Transduction Systems

Hlavacek, W. S., Faeder, J. R., Blinov, M. L., Posner, R. G., Hucka, M., Fontana, W.

Journal:

Science Signaling

Année:

2006

Langue:

english

Fichier:

PDF, 996 KB

english, 2006

9

Slope stability investigation at Gaspé copper mines

Hucka, V. J., Levaque, J. G., Allard, M.

Journal:

Canadian Geotechnical Journal

Année:

1977

Langue:

english

Fichier:

PDF, 596 KB

english, 1977

10

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

A. Finney, J. Doyle, H. Kitano, B. Kovitz, M. Hucka, B. Shapiro, A. Funahashi, J. Matthews, B. Bornstein, S. Keating, M. Schilstra

Année:

2004

Langue:

english

Fichier:

PDF, 749 KB

english, 2004

11

MathSBML: a package for manipulating SBML-based biological models

Shapiro, B. E., Hucka, M., Finney, A., Doyle, J.

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 47 KB

english, 2004

12

LibSBML: an API Library for SBML

Bornstein, B. J., Keating, S. M., Jouraku, A., Hucka, M.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 70 KB

english, 2008

13

SBML2LATEX: Conversion of SBML files into human-readable reports

Drager, A., Planatscher, H., Motsou Wouamba, D., Schroder, A., Hucka, M., Endler, L., Golebiewski, M., Muller, W., Zell, A.

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 149 KB

english, 2009

14

Software search is not a science, even among scientists: A survey of how scientists and engineers find software

Hucka, M., Graham, M.J.

Journal:

Journal of Systems and Software

Année:

2018

Langue:

english

Fichier:

PDF, 737 KB

english, 2018

15

Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net

Journal:

Bioentrepreneur

Année:

2007

Langue:

english

Fichier:

PDF, 7.72 MB

english, 2007

16

Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net

Journal:

Bioentrepreneur

Année:

2007

Fichier:

PDF, 7.72 MB

2007

17

Laboratory investigation of penetration properties of the complete coal series

B. Das, V. Hucka

Journal:

International Journal of Rock Mechanics and Mining Sciences & Geomechanics Abstracts

Année:

1975

Langue:

english

Fichier:

PDF, 668 KB

english, 1975

18

Detail REA production planning model using value chain

Frantisek Hunka, Miroslav Hucka, Josef Kasik, Dominik Vymetal

Journal:

Procedia Computer Science

Année:

2011

Langue:

english

Fichier:

PDF, 238 KB

english, 2011

19

Software that goes with the flow in systems biology

Michael Hucka, Nicolas Le Novère

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 258 KB

english, 2010

20

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

Chen Li, Marco Donizelli, Nicolas Rodriguez, Harish Dharuri, Lukas Endler, Vijayalakshmi Chelliah, Lu Li, Enuo He, Arnaud Henry, Melanie I Stefan, Jacky L Snoep, Michael Hucka, Nicolas Le Novère, Cami

Journal:

BMC Systems Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2010

21

Study of coal properties by micro-technique

B. Das, V. Hucka

Journal:

Année:

1976

Langue:

english

Fichier:

PDF, 604 KB

english, 1976

22

A new test for disintegrability of coal

J. Brych, V. Hucka

Journal:

International Journal of Rock Mechanics and Mining Sciences & Geomechanics Abstracts

Année:

1973

Langue:

english

Fichier:

PDF, 496 KB

english, 1973

23

Minimum information requested in the annotation of biochemical models (MIRIAM)

Novère, Nicolas Le, Finney, Andrew, Hucka, Michael, Bhalla, Upinder S, Campagne, Fabien, Collado-Vides, Julio, Crampin, Edmund J, Halstead, Matt, Klipp, Edda, Mendes, Pedro

Journal:

Nature Biotechnology

Année:

2005

Langue:

english

Fichier:

PDF, 216 KB

english, 2005

24

NeuroML for plug and play neuronal modeling

N.H Goddard, D Beeman, R Cannon, H Cornelis, M.-O Gewaltig, G Hood, F Howell, P Rogister, E.De Schutter, K Shankar, M Hucka

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 67 KB

english, 2002

25

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Dagmar Waltemath, Richard Adams, Frank T Bergmann, Michael Hucka, Fedor Kolpakov, Andrew K Miller, Ion I Moraru, David Nickerson, Sven Sahle, Jacky L Snoep, Nicolas Le Novère

Journal:

BMC Systems Biology

Année:

2011

Langue:

english

Fichier:

PDF, 927 KB

english, 2011

26

Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration

Sauro, Herbert M., Hucka, Michael, Finney, Andrew, Wellock, Cameron, Bolouri, Hamid, Doyle, John, Kitano, Hiroaki

Journal:

Omics A Journal of Integrative Biology

Année:

2003

Langue:

english

Fichier:

PDF, 523 KB

english, 2003

27

No evidence of facilitation between invasive Rhamnus cathartica (European buckthorn) and invasive earthworms in west central Minnesota

Wyckoff, Peter H., Shaffer, Andrew, Hucka, Brenna, Bombyk, Matthew, Wipf, Angela

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 821 KB

english, 2014

28

Density Measurements of Argonne Premium Coal Samples

Huang, He, Wang, Keyu, Bodily, David M., Hucka, V. J.

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 500 KB

english, 1995

29

STATE DELEGATES

Gary C. Hucka, Donna C. Willard, Vernon F. L. Char, Roy A. Hammer, James E. McDaniel, Alfred P. Carlton, Jr., Kermit Edward Bye, Richard H. Allen, Peter F. Langrock and Roderick B. Mathews

Journal:

Année:

1989

Langue:

english

Fichier:

PDF, 988 KB

english, 1989

30

[IEEE 2011 IEEE Seventh International Conference on e-Science Workshops (eScienceW) - Stockholm, Sweden (2011.12.5-2011.12.8)] 2011 IEEE Seventh International Conference on e-Science Workshops - A Profile of Today's SBML-Compatible Software

Hucka, Michael, Bergmann, Frank T., Keating, Sarah M., Smith, Lucian P.

Année:

2011

Langue:

english

Fichier:

PDF, 558 KB

english, 2011

31

[IEEE 2006 Winter Simulation Conference - Monterey, CA, USA (2006.12.3-2006.12.6)] Proceedings of the 2006 Winter Simulation Conference - Challenges for Modeling and Simulation Methods in Systems Biology

Sauro, Herbert, Harel, David, Kwiatkowska, Marta, Shaffer, Clifford, Uhrmacher, Adelinde, Hucka, Michael, Mendes, Pedro, Stromback, Lena, Tyson, John

Année:

2006

Langue:

english

Fichier:

PDF, 164 KB

english, 2006

32

BioModels: ten-year anniversary

Chelliah, V., Juty, N., Ajmera, I., Ali, R., Dumousseau, M., Glont, M., Hucka, M., Jalowicki, G., Keating, S., Knight-Schrijver, V., Lloret-Villas, A., Natarajan, K. N., Pettit, J.-B., Rodriguez, N.,

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2015

33

Towards NeuroML: Model Description Methods for Collaborative Modelling in Neuroscience

Goddard, N. H., Hucka, M., Howell, F., Cornelis, H., Shankar, K., Beeman, D.

Journal:

Philosophical Transactions Biological Sciences

Année:

2001

Langue:

english

Fichier:

PDF, 311 KB

english, 2001

34

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

Bergmann, Frank T, Adams, Richard, Moodie, Stuart, Cooper, Jonathan, Glont, Mihai, Golebiewski, Martin, Hucka, Michael, Laibe, Camille, Miller, Andrew K, Nickerson, David P, Olivier, Brett G, Rodrigue

Journal:

BMC Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2014

35

Escalating model sizes and complexities call for standardized forms of representation

Hucka, Michael, Finney, Andrew

Journal:

Molecular Systems Biology

Année:

2005

Langue:

english

Fichier:

PDF, 63 KB

english, 2005

36

CellML2SBML: conversion of CellML into SBML

Schilstra, M. J., Li, L., Matthews, J., Finney, A., Hucka, M., Le Novere, N.

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 85 KB

english, 2006

37

JSBML: a flexible Java library for working with SBML

Drager, A., Rodriguez, N., Dumousseau, M., Dorr, A., Wrzodek, C., Le Novere, N., Zell, A., Hucka, M.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 212 KB

english, 2011

38

An analysis of soar as an integrated architecture

Laird, John, Hucka, Mike, Huffman, Scott, Rosenbloom, Paul

Journal:

ACM SIGART Bulletin

Année:

1991

Langue:

english

Fichier:

PDF, 654 KB

english, 1991

39

Hebb's accomplishments misunderstood

Hucka, Michael, Weaver, Mark, Kaplan, Stephen

Journal:

Behavioral and Brain Sciences

Année:

1995

Langue:

english

Fichier:

PDF, 5.52 MB

english, 1995

40

Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)

Le Novère, Nicolas, Hucka, Michael, Anwar, Nadia, Bader, Gary D, Demir, Emek, Moodie, Stuart, Sorokin, Anatoly

Journal:

Standards in Genomic Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 277 KB

english, 2011

41

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Waltemath, Dagmar, Bergmann, Frank T., Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Hua

Journal:

Standards in Genomic Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 669 KB

english, 2014

42

Toward community standards and software for whole-cell modeling

Waltemath, Dagmar, Karr, Jonathan, Bergmann, Frank, Chelliah, Vijayalakshmi, Hucka, Michael, Krantz, Marcus, Liebermeister, Wolfram, Mendes, Pedro, Myers, Chris, Pir, Pinar, Alaybeyoglu, Begum, Aranga

Journal:

IEEE Transactions on Biomedical Engineering

Année:

2016

Langue:

english

Fichier:

PDF, 4.66 MB

english, 2016

43

Systems biology markup language: Level 2 and beyond

Finney, A., Hucka, M.

Journal:

Biochemical Society Transactions

Année:

2003

Langue:

english

Fichier:

PDF, 48 KB

english, 2003

44

Neuroscience Databases: Tools for Exploring Brain Structure-Function Relationships || Towards NeuroML: Model Description Methods for Collaborative Modelling in Neuroscience

Nigel H. Goddard, Michael Hucka, Fred Howell, Hugo Cornelis, Kavita Shankar and David Beeman

Journal:

Philosophical Transactions Biological Sciences

Année:

2001

Langue:

english

Fichier:

PDF, 3.10 MB

english, 2001

45

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Drager, A., Famili, I., Feist, A. M., Fleming, R. M., Fong, S. S., Hatzimanikatis, V., Herrgard, M. J., Holder, A., Hucka

Journal:

Molecular Systems Biology

Année:

2015

Langue:

english

Fichier:

PDF, 147 KB

english, 2015

46

Specifications of Standards in Systems and Synthetic Biology

Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan

Journal:

Journal of Integrative Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 102 KB

english, 2015

47

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016

Schreiber, Falk, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Novère, Nicolas Le, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar

Journal:

Journal of Integrative Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 829 KB

english, 2016

48

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Hucka, Michael, Bergmann, Frank T., Hoops, Stefan, Keating, Sarah M., Sahle, Sven, Schaff, James C., Smith, Lucian P., Wilkinson, Darren J.

Journal:

Journal of Integrative Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2015

49

[IEEE 2017 Winter Simulation Conference (WSC) - Las Vegas, NV (2017.12.3-2017.12.6)] 2017 Winter Simulation Conference (WSC) - A brief history of COMBINE

Myers, Chris J., Bader, Gary, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Le Novere, Nicolas, Nickerson, David P., Schreiber, Falk, Waltemath, Dagmar

Année:

2017

Langue:

english

Fichier:

PDF, 456 KB

english, 2017

50

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017

Schreiber, Falk, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., Novère, Nicolas Le, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar

Journal:

Journal of Integrative Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 329 KB

english, 2018